PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0150861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 215aa MW: 23179.3 Da PI: 5.585

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0150861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	6.2e-07	3	47	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e e++ C ++ lC C +++H H++vpl RcHm_v2.0_Chr2g0150861 3 IRCNACEVAEAEVLCCADEAALCWGCDQKIHAAnklaskHQRVPL 47 58****99*******************66899999999986 PP
2	zf-B_box	29.7	1.3e-09	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +kC+ ++e +fC +++ llC++C +++H H RcHm_v2.0_Chr2g0150861 54 LPKCDFCQETVGYFFCLEDRALLCRKCDVAIHTAnsyvssH 94 689*****9*******************554555556 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MKIRCNACEV AEAEVLCCAD EAALCWGCDQ KIHAANKLAS KHQRVPLSSS SSPLPKCDFC 60 QETVGYFFCL EDRALLCRKC DVAIHTANSY VSSHQRFLLP GVEVGLEATE PCNSPSTKEK 120 LSSVETVSES ASSPSIPRSV IDHFSTGEIK DTIPMQIGGI GTLVSDKIPL NRSTTTSVGT 180 ISGWLLEECL GLTYPNQNNG SLDTMPSKVY GSYHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	5e-59	DBB family protein