PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0152151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 211aa MW: 24055.1 Da PI: 8.2293

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0152151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ede+l +a++ +G + W++ a++ g++R +k+c++rw +yl RcHm_v2.0_Chr2g0152151 15 KGKWTTQEDEKLTEAIAVHGAKKWNSLASKAGLNRNGKSCRLRWVNYL 62 79********************************************97 PP
2	Myb_DNA-binding	50.4	5.1e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++ +++++k+lG++ W++Ia +++ gRt++++k++w+++l RcHm_v2.0_Chr2g0152151 68 RGDMSDQEEDMIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 7899****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MASEKQEPTA REFVKGKWTT QEDEKLTEAI AVHGAKKWNS LASKAGLNRN GKSCRLRWVN 60 YLRPNLKRGD MSDQEEDMII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKINQK 120 EKQSSNGSNS TIQIPTVDEK PSVADDDRKV HVEMKQECLS SGVGTSAALI KKEVMIDPED 180 YSNTNINNID VDDFFNLLHK EPLSWEVPQI P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	2e-53	MYB family protein