PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0152301
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 180aa    MW: 20990.1 Da    PI: 9.4029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0152301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1531.4e-47191491128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             + pGfrFhPtdeelv +yL  kve+kk  ++l++ i+++diyk++PwdLp + ++++ke+yfF++r +ky+++ r+nr+t sg+Wka
  RcHm_v2.0_Chr2g0152301  19 MLPGFRFHPTDEELVGFYLPVKVEKKKvsTRLDQLIRQIDIYKYDPWDLPIS-TEGDKECYFFCRRGRKYRNSIRPNRVTGSGFWKA 104
                             579************************65555667***************44.56799***************************** PP

                     NAM  86 tgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                             tg dk+++s+k+ l  +glkk+Lv+y+g+a kg+ktdW+m+e+rl
  RcHm_v2.0_Chr2g0152301 105 TGIDKPIYSAKEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 149
                             *********7443356***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MEVTKVKFKD DDEELAGGML PGFRFHPTDE ELVGFYLPVK VEKKKVSTRL DQLIRQIDIY  60
KYDPWDLPIS TEGDKECYFF CRRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSAKEPLEC  120
IGLKKSLVYY RGSAGKGTKT DWMMNEFRLP PNGKSSTNFL NVKDNTQEAM PFRYYMYLCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-70NAC family protein