PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0155581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 375aa MW: 39958.5 Da PI: 4.5727

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0155581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.3	4.8e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ RcHm_v2.0_Chr2g0155581 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	23.5	1.1e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ RcHm_v2.0_Chr2g0155581 46 LLCERCNSQPALVRCAEERVSLCQNCDWMGH-GastsaasHKRQT 89 57*****************************.5588888888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 AEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL ELPSAAAGES 120 ACEQEMGLMS IAENSTGSAW SPPENNTREN ASDKFEVSDV GAMDKSDGLV GSSSVPALNS 180 APQVVGQVPG SANSTLPKLY CHGTKSPGLC EDDDLYGDFD MDEMDLSLEN YDELFGVSLN 240 HSEELFKNGG IDSLFGARNM SRAQELIAAE GSSIGRVNAL QQPACSTAAS ADSVMSTKTE 300 PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN 360 AVMRYKEKKK ARKLV

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL ELPSAAAGES  120
ACEQEMGLMS IAENSTGSAW SPPENNTREN ASDKFEVSDV GAMDKSDGLV GSSSVPALNS  180
APQVVGQVPG SANSTLPKLY CHGTKSPGLC EDDDLYGDFD MDEMDLSLEN YDELFGVSLN  240
HSEELFKNGG IDSLFGARNM SRAQELIAAE GSSIGRVNAL QQPACSTAAS ADSVMSTKTE  300
PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN  360
AVMRYKEKKK ARKLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	374	EKKKARKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-133	CO-like family protein