PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0155961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 207aa    MW: 21108.2 Da    PI: 7.1444
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0155961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.11.3e-5823118297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+
  RcHm_v2.0_Chr2g0155961  23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQ 109
                             89************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             kyre+egek
  RcHm_v2.0_Chr2g0155961 110 KYREMEGEK 118
                             *******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MADSDNDSGG HNGHSQGGEL SAREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV  60
SEFISFVTGE ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKIYLQK YREMEGEKGA  120
VGTAGRDKEG GSGGGGSAAG GGGGSGGGLS SGTSGGGGGG AFNGVYGGMG MLGHHQGHVY  180
GSGGYQHQMG IGEKRGGSGG GASVRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-75NF-YB family protein