PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0156171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SAP
Protein Properties Length: 459aa    MW: 50724 Da    PI: 7.0228
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0156171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP726.62.2e-22114581455
                     SAP   1 mssssssssseseegseggeggdass........gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqv 79 
                             msssssss s+s+ +++   +g+a++        +++egpsssr+ra+ evwpePfleala+qvai asr++Grlaaa alanvfqv
  RcHm_v2.0_Chr2g0156171   1 MSSSSSSSPSSSSPSTSPFDSGNAAGtstvrqrrDDFEGPSSSRRRAVSEVWPEPFLEALAAQVAIAASRNSGRLAAAAALANVFQV 87 
                             7888877776666665444444444467899999***************************************************** PP

                     SAP  80 cstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaG 166
                             cstwravsrsdllw+rltrriW rt+ll+dtWr+ey+y+hrtarnfrtrry+++ l fdp+dvd+   ad l+Crcl+lsd+yla+G
  RcHm_v2.0_Chr2g0156171  88 CSTWRAVSRSDLLWRRLTRRIWGRTRLLQDTWRDEYVYWHRTARNFRTRRYAHTILYFDPSDVDD---ADGLTCRCLTLSDNYLACG 171
                             *************************************************************9998...689**************** PP

                     SAP 167 fadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGs 253
                             fadGavrlfdl+trlhvst++p++rdrlGrfsrav+Givis+srl+fatldGdihva + g     +rra+lG+v++dG+lvdf+G+
  RcHm_v2.0_Chr2g0156171 172 FADGAVRLFDLATRLHVSTYRPHQRDRLGRFSRAVTGIVISNSRLTFATLDGDIHVADVPG--PPITRRAHLGQVMDDGVLVDFTGC 256
                             *********************************************************9888..679********************* PP

                     SAP 254 grWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreee 340
                             grWwvGlyaGvpGra hiWd++teelv+vGG lt+Peav+GWhmlte+  +vGrvrvt +etavaCts r++vfdlrn g vl+ee+
  RcHm_v2.0_Chr2g0156171 257 GRWWVGLYAGVPGRAIHIWDSNTEELVYVGGELTEPEAVVGWHMLTEMSGFVGRVRVTTQETAVACTSARVIVFDLRNGGEVLAEEQ 343
                             *************************************************************************************** PP

                     SAP 341 errGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervg 426
                              rrG++v++ d+s+ ayvvv +rG a+vrrv++ ee+crf+vrg  q g +gC+nggyal++aggv+rvWe+e+ e  ly++ ervg
  RcHm_v2.0_Chr2g0156171 344 YRRGIVVTATDVSDAAYVVVGNRGLARVRRVDTSEELCRFSVRGaGQMGAMGCMNGGYALMCAGGVIRVWEVERGE-ELYTFWERVG 429
                             ********************************************999***************************87.89******** PP

                     SAP 427 evnalvaddrhvavsssdgtihlldfgaq 455
                              vna+v d+rhv +  sd+t+hl+dfg q
  RcHm_v2.0_Chr2g0156171 430 AVNAFVCDERHVVAWGSDATLHLWDFGGQ 458
                             **************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MSSSSSSSPS SSSPSTSPFD SGNAAGTSTV RQRRDDFEGP SSSRRRAVSE VWPEPFLEAL  60
AAQVAIAASR NSGRLAAAAA LANVFQVCST WRAVSRSDLL WRRLTRRIWG RTRLLQDTWR  120
DEYVYWHRTA RNFRTRRYAH TILYFDPSDV DDADGLTCRC LTLSDNYLAC GFADGAVRLF  180
DLATRLHVST YRPHQRDRLG RFSRAVTGIV ISNSRLTFAT LDGDIHVADV PGPPITRRAH  240
LGQVMDDGVL VDFTGCGRWW VGLYAGVPGR AIHIWDSNTE ELVYVGGELT EPEAVVGWHM  300
LTEMSGFVGR VRVTTQETAV ACTSARVIVF DLRNGGEVLA EEQYRRGIVV TATDVSDAAY  360
VVVGNRGLAR VRRVDTSEEL CRFSVRGAGQ MGAMGCMNGG YALMCAGGVI RVWEVERGEE  420
LYTFWERVGA VNAFVCDERH VVAWGSDATL HLWDFGGQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-170SAP family protein