PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0157941

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 436aa MW: 47576.1 Da PI: 7.7781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0157941	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.4e-12	48	74	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ RcHm_v2.0_Chr2g0157941 48 PGEPDCIYYLRTGLCGYGSNCRFNHPK 74 5789*********************96 PP
2	zf-CCCH	38.6	1.8e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++CkF+H++ RcHm_v2.0_Chr2g0157941 92 QPDCGYYLKTGTCKYGSTCKFHHPR 116 789********************96 PP
3	zf-CCCH	38.1	2.5e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ RcHm_v2.0_Chr2g0157941 139 SCPYYMRTGSCKFGPACKFHHPQ 161 6********************97 PP
4	zf-CCCH	39.4	1e-12	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ RcHm_v2.0_Chr2g0157941 280 DQPECRYFMNTGTCKYGAECKYHHPK 305 689*********************96 PP
5	zf-CCCH	34.1	4.5e-11	322	348	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC ++ +G+CkyG++C+F H++ RcHm_v2.0_Chr2g0157941 322 PGQPLCTNYIMYGICKYGPTCRFDHPF 348 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MPDTRQALKH AVPNQSDGTV EEGFWRLTIN ENQDGGVVAQ SNLYPDRPGE PDCIYYLRTG 60 LCGYGSNCRF NHPKYASQAA QYSGELPERV GQPDCGYYLK TGTCKYGSTC KFHHPRDRRG 120 AGPVLFNILG LPMHQEEKSC PYYMRTGSCK FGPACKFHHP QPPSFGTAVP AFGSTGSTVV 180 PSSGVPYSGG LSAWSFPRAP YVAGPRLATP QPYMPAVVLS PPQGVLPAHG WNTYVGNLSP 240 VSSTSILGSN LAYNSRSQGE SASNGQVHLS SSPNLPQRPD QPECRYFMNT GTCKYGAECK 300 YHHPKERIAE SATNPLGLPS RPGQPLCTNY IMYGICKYGP TCRFDHPFME HSGNYSFGMP 360 MLLDSSPLNY TRNWIAPQGF ETSPSISSKF PDVVQKPESE KYQNSETKVP EESPERATGT 420 LPPSPSSSET VQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MPDTRQALKH AVPNQSDGTV EEGFWRLTIN ENQDGGVVAQ SNLYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPKYASQAA QYSGELPERV GQPDCGYYLK TGTCKYGSTC KFHHPRDRRG  120
AGPVLFNILG LPMHQEEKSC PYYMRTGSCK FGPACKFHHP QPPSFGTAVP AFGSTGSTVV  180
PSSGVPYSGG LSAWSFPRAP YVAGPRLATP QPYMPAVVLS PPQGVLPAHG WNTYVGNLSP  240
VSSTSILGSN LAYNSRSQGE SASNGQVHLS SSPNLPQRPD QPECRYFMNT GTCKYGAECK  300
YHHPKERIAE SATNPLGLPS RPGQPLCTNY IMYGICKYGP TCRFDHPFME HSGNYSFGMP  360
MLLDSSPLNY TRNWIAPQGF ETSPSISSKF PDVVQKPESE KYQNSETKVP EESPERATGT  420
LPPSPSSSET VQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-111	C3H family protein