PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0158421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 349aa    MW: 39082 Da    PI: 6.0538
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0158421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-082763082355
                             SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                             +yps+ ++  LA+++gLt +q+ +WF N+R ++
  RcHm_v2.0_Chr2g0158421 276 PYPSEPQKFGLAASTGLTVKQINNWFINQRKRH 308
                             8*****************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MESERWFRVS NVREIEKMEG GSNNCNSKYY SHGVMGSGSS SGMLMPPPLV NSYATAADQT  60
SSSSNQQHYV SLPFTNINPN QNDSQEYEMS MKAKIMGHPL FPRLLASYVN CQKVGAPAEV  120
VARLEHAAAA SISYAAAISE ACEESEPDPE LDQFMEAYCE MLAKYHEELT KPFHEAMLGL  180
SKINSQLKAL SVSPSYSAST GDLVRQRGSS EEADVNESGI DPRAEDWDIK AKLLQKYGGC  240
LGSLSQELKQ KKKNGKLPKE ARVQLQEWWS RNYTWPYPSE PQKFGLAAST GLTVKQINNW  300
FINQRKRHWK PSSEGMQLAM VDVDHPQFYY MDHLICNPLP MDCTSTPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.12e-86TALE family protein