PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0160051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 211aa    MW: 24753.9 Da    PI: 10.2861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0160051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06832127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            +kt+lC  + r G C++  +C+FaHg+
  RcHm_v2.0_Chr2g0160051  8 FKTKLCALYER-GRCSR-QSCSFAHGE 32
                            69*****9999.*****.*******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MGEQRKLFKT KLCALYERGR CSRQSCSFAH GEVELRRFQG PFHGRRDSGV SDLRDTIDRS  60
YSPRRGYSPA RDARGRHTLR DYSPSRSLEN ESKSRKRQHL DDHSDYSGSL RIPNEPEDEA  120
KEASSVIQKK LQVVQSELKM VEHRRSQLEI YLGERSKEVD SLTSKIQELE AQLYKEKEEC  180
KRISHKVKKF VKAHSHHSRI QDQLKRQALF K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-39C3H family protein