PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0160621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 194aa    MW: 21193.5 Da    PI: 9.209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0160621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1965115155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta eAa a+++a+++++g
  RcHm_v2.0_Chr2g0160621  65 CNYRGVRQRT-WGKWVAEIRSP---N-RgSRLWLGTFPTAIEAALAYDEAARAMYG 115
                             56*****999.**********8...3.35************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MTKLKKFHSK QDGSNPVAET LAKWKELNDN LESSNDGSKP TRKVPAKGSK KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIRSPNRGSR LWLGTFPTAI EAALAYDEAA RAMYGSSARL  120
NFPKVTISSY STNSSCRATI SAPSCVVTSA GSESSGHSED FSPQDKVNSH SPHVVNTDVI  180
DLNQMDLNHT EEDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-38ERF family protein