PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0161241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 254aa    MW: 28902.4 Da    PI: 6.1632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0161241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  RcHm_v2.0_Chr2g0161241 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLSKFAGLSRCGKSCRLRWLNYL 61
                            799*****************99************************97 PP
2Myb_DNA-binding56.37.5e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T eE+e++++++++lG++ W++Ia+ ++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0161241  67 RGNYTNEEEEIIIRLHEKLGNK-WSAIAAQLQ-GRTDNEVKNHWHTN 111
                             899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVRTPCCDER GVKKGTWTPE EDRKLIAYVT RYGCWNWRQL SKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TNEEEEIIIR LHEKLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRLMMNK  120
HKASSVSITH DDHHEEVVPK SSDQPKTTAT ADFANAETTV DQIPQIDYFD YPELWSPQPS  180
SSVVSSMTTD TAVAITAADG LVVVDNATSA AMETIYGDNF WTEPFLADNS YNPTGFYTPL  240
IEPEFLYPSF DGAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-59MYB family protein