PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0161271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 262aa    MW: 29759.3 Da    PI: 5.3783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0161271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  RcHm_v2.0_Chr2g0161271 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                            799*****************99************************97 PP
2Myb_DNA-binding56.85.2e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T eE+e++++++++lG++ W++Ia+ ++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0161271  67 RGNYTSEEEEIIIRLHEKLGNK-WSAIAAQLQ-GRTDNEVKNHWHTN 111
                             899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MVRTPCCDER GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TSEEEEIIIR LHEKLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRLMMNK  120
HKASSVSITH DDHHEEVVPK SSDLPKTTAP ADFANAETTV DQIPQIDYLD YPELWSPQPS  180
SSEVSSMTSD TAVAITAADG LVVEDNATSA AMGTIYGDFG DNFWTEPFLA DNSYNTSGFY  240
TPLMEPEFLY PPFDGDFLYG AT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-61MYB family protein