PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0162621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 300aa MW: 32288.3 Da PI: 8.4865

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0162621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.4	1.7e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++ RcHm_v2.0_Chr2g0162621 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWS 90 6************************************************************************************ PP DUF260 83 lqqqleqlkaelallkee 100 +++ql+q+++e +l +++ RcHm_v2.0_Chr2g0162621 91 GSWQLCQAAVENVLKGQP 108 ********99988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGQPIT PITSEAAASG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKAKT RYRFKRSVGK PKQPNKTGSG SGVEDAAARF 180 EAKPNWTSDE FNRSTSHESS LSHQSEAANV DGDSKETESM VSSETAEASL LFRAEPESSA 240 HKRTAPVQEN ELGLELTLGF ESSSRAPHVV PVKKRRVDAS GFCGGSSSGD GACKMELGLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-100	LBD family protein