PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0164941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29188.2 Da    PI: 9.7486
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0164941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.2e-30959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  RcHm_v2.0_Chr2g0164941  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                            79***********************************************86 PP
2K-box1041.9e-34801756100
                   K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             +    +++ + +++ e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn++++e+i+e+qkk + lqe+n
  RcHm_v2.0_Chr2g0164941  80 SMGvPASESQGNWSMEFPKLTARIEILQRKIRNYTGEDLDPLSLRELQSLEQQIDTALKRVRARKNQVMHESISEMQKKHRTLQEQN 166
                             444345666889*************************************************************************** PP

                   K-box  92 kaLrkklee 100
                             ++L kkl+e
  RcHm_v2.0_Chr2g0164941 167 NSLAKKLKE 175
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD  60
SSMEGILERY EQYSYAERQS MGVPASESQG NWSMEFPKLT ARIEILQRKI RNYTGEDLDP  120
LSLRELQSLE QQIDTALKRV RARKNQVMHE SISEMQKKHR TLQEQNNSLA KKLKENEKLL  180
QEEPNNNQQP NPSTLVLMPP LQATSPPALL SSLTIGGAFQ GRGDAMDEDA EDHQGSAQTR  240
PASNTLMPPW MVRHLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-79MIKC_MADS family protein