PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0164951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28494.6 Da    PI: 8.9235
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0164951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  RcHm_v2.0_Chr2g0164951  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                            79***********************************************96 PP
2K-box97.52e-32791745100
                   K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             + ++ +++ ++s+++e+ kLk + e+Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs+K++ +l+q+++lq ke++l e+n
  RcHm_v2.0_Chr2g0164951  79 EVNEPAKELEQSSYREYLKLKTRCESLQRTQRNLLGEDLGPLNTKELEQLERQLESSLKHVRSTKTQSMLDQLSDLQSKEHMLIEAN 165
                             555667777899*************************************************************************** PP

                   K-box  92 kaLrkklee 100
                             ++L++kl+e
  RcHm_v2.0_Chr2g0164951 166 RDLTMKLDE 174
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSILKTLERY QKCSYGAMEV NEPAKELEQS SYREYLKLKT RCESLQRTQR NLLGEDLGPL  120
NTKELEQLER QLESSLKHVR STKTQSMLDQ LSDLQSKEHM LIEANRDLTM KLDEINSGTQ  180
LRQTWERGHA HQTMLYGTQH AQTQGLMFQP LDCNPTLQIG YNAVGSQHMT AATPAPTQPV  240
NGFIPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-110MIKC_MADS family protein