PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0166121
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 150aa    MW: 17185.5 Da    PI: 6.9401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0166121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1003.4e-3191282128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             ppGfrF+P+d e++ +yL +k+ g+++ + +vi++vd+y+  P +Lp   + + ee+ewyf+++r +++      +  tk+gy  at
  RcHm_v2.0_Chr2g0166121   9 PPGFRFQPSDAEIIGFYLINKILGRPNAF-DVISTVDVYSNSPDQLPlGnAGHFEENEWYFYTTRPNSS------HFLTKDGYF-AT 87 
                             8*************************777.9****************6334444889*******98754......458999997.58 PP

                     NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               d+++++ ++++vg k++L fy gr p+g kt+Wv+he+r+
  RcHm_v2.0_Chr2g0166121  88 SMDEQIFH-NNQVVGFKQILRFYLGRPPTGMKTNWVVHEFRV 128
                             899****9.999****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MPSTCPCPPP GFRFQPSDAE IIGFYLINKI LGRPNAFDVI STVDVYSNSP DQLPLGNAGH  60
FEENEWYFYT TRPNSSHFLT KDGYFATSMD EQIFHNNQVV GFKQILRFYL GRPPTGMKTN  120
WVVHEFRVNP NIFPAGKLDN VLQVKVITYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-29NAC family protein