PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0166281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 532aa MW: 59080.8 Da PI: 7.9949

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0166281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F rk L H++ H RcHm_v2.0_Chr2g0166281 82 VCKVCGKAFERKNALFGHMKHH 103 7*******************98 PP
2	zf-C2H2	15.7	4.2e-05	114	134	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C dCgk F + L +H r+H RcHm_v2.0_Chr2g0166281 114 CRDCGKGFESLKALSVHRRVH 134 *******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MEELRGAGHV CKLCGQSCVS GKVLGGHMRS HAFKNPIKSS RKHKKANMGF QDDGDGNVGY 60 GLRLNPKRSW KFSGKEEEEE IVCKVCGKAF ERKNALFGHM KHHSVKQRNE AQWCRDCGKG 120 FESLKALSVH RRVHAKRLKG FDEKERGLTQ KLCIESLGLV RKKRSARFRY RIASPSSSFP 180 GLNLSECKFG NGCGVDVEEA AFCLMMISRG LGNWGQISSV AESSNNNSFS VEVESPSQRK 240 RVRDNEGGVF ACDDDSGSLQ IKRAKVEVSA DCVLDCENDS TVKEVSEFGE IDSEFVGDEM 300 PKSGFVLYGI EELDVETSEE EVEVGLGSMK FGLSKKAVLK ACDSVNKGLY ATESETFADS 360 KKKREHKCRT CRRVFGTHQA LGGHQRVHKR SYKSLVLKNE DGEDRTQIGT LCETEDNCNP 420 AKLKSSDNSV EQEMETVTVG GSERKGHVCG ICLKVFASGQ ALGGHKRSHY VKDSEIATDK 480 TRVMKQQISD ICDAFEVSHQ LKLQEENDGV EFKPWWAGTE QKHELLVGLI PN

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MEELRGAGHV CKLCGQSCVS GKVLGGHMRS HAFKNPIKSS RKHKKANMGF QDDGDGNVGY  60
GLRLNPKRSW KFSGKEEEEE IVCKVCGKAF ERKNALFGHM KHHSVKQRNE AQWCRDCGKG  120
FESLKALSVH RRVHAKRLKG FDEKERGLTQ KLCIESLGLV RKKRSARFRY RIASPSSSFP  180
GLNLSECKFG NGCGVDVEEA AFCLMMISRG LGNWGQISSV AESSNNNSFS VEVESPSQRK  240
RVRDNEGGVF ACDDDSGSLQ IKRAKVEVSA DCVLDCENDS TVKEVSEFGE IDSEFVGDEM  300
PKSGFVLYGI EELDVETSEE EVEVGLGSMK FGLSKKAVLK ACDSVNKGLY ATESETFADS  360
KKKREHKCRT CRRVFGTHQA LGGHQRVHKR SYKSLVLKNE DGEDRTQIGT LCETEDNCNP  420
AKLKSSDNSV EQEMETVTVG GSERKGHVCG ICLKVFASGQ ALGGHKRSHY VKDSEIATDK  480
TRVMKQQISD ICDAFEVSHQ LKLQEENDGV EFKPWWAGTE QKHELLVGLI PN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	4e-14	C2H2 family protein