PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0166851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 357aa    MW: 40131.3 Da    PI: 5.7483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0166851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.7e-15135185256
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             ++ GVr+++ +g+W+AeI+d +     r  +  lg+f taeeAa  +++a+ +l+g+
  RcHm_v2.0_Chr2g0166851 135 KFWGVRQRR-WGKWAAEIHDpV-----RkSSLGLGTFQTAEEAAMVYDRAAIQLRGH 185
                             688***998.**********44.....55**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MPRIIFIHKV SNQTFRYTKS ETQLTISTRR QFLTPKCPLC PQFFFFFNNF FSGTKFIFVT  60
DEDATVAVPK IVRISITDED ATNTSSNEEE QDQQQRLTKR VINEVRIEEE SEVVRVFLAN  120
NQKQKSKPLP EEKRKFWGVR QRRWGKWAAE IHDPVRKSSL GLGTFQTAEE AAMVYDRAAI  180
QLRGHNALTN IIAPPSKILI PDHDSSSNES SSINNLSCLN ASSSIDHIVV IDEYDSGKQC  240
QSIRSPTSVL SGSDNEWRPG SKEQDETHFV KDYGYFDGVI SPTKAIFFGV IELILLEEMN  300
LVPETMLVTS NSKTQLLNLE QNLFTGGGMG VQLEGKGGVG SEGVSVEVRK AALEARE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-27ERF family protein