PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0167081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 419aa    MW: 46258.9 Da    PI: 4.3195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0167081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-194796255
                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  RcHm_v2.0_Chr2g0167081 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                            789******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MARKRKVNEG VEETKSCIEG TMAWDEMVKE ASAAAALGGA ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSPSP SSTPALPSKI  120
TNLLLQRLKA RNNNTSCSAP SAAPLPVNHQ QKQYQEEAAA EFSENQYTDF LNDPEDYITS  180
NNDNIPEISA SSIDYMTSSF ESCLTEKEEY TTAREAEQQM DYGNLSEVAE ITYSGGDANF  240
VGGSEEDAEE EEVNGQVGAI DFQFVDDIGS SDYYSPSPFE IAEEIEEAVE PETYADEPSM  300
LRAAMKRMKY ERKFSASLYA FNGIPECLKL KIGSSTTGNT RMRGISDLQR ACSNKNKEEA  360
PAKQEYEGKK EEENQQRSTD MGSSSSSSSF SSLSAVNGDG ELSLWSSLDL QPICFLSTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16ERF family protein