PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0167461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 339aa    MW: 38550.1 Da    PI: 6.7853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0167461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.6e-57161421129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatg
  RcHm_v2.0_Chr2g0167461  16 LPPGFRFHPTDEELISHYLSPKVLDSGFTA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATG 101
                             79*************************999.89***************888999********************************* PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             kdke+++  ++lvg+kktLvfykgrapkgekt+Wvmheyrle
  RcHm_v2.0_Chr2g0167461 102 KDKEIYK-AKALVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                             *******.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MENVSAFINE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SGFTARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK ALVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKCSGG KKTHISGLVR  180
ESPFGNEFRP SFLPPLMDSP PYNNSDTRTT TVGETSHVSC FSDAMEDQKT QDDIIDSFNN  240
NNNISSSSNN NNNSHLLASS SSFPFKPSVQ NSYFSDQIAP NTGNMQYPDS GFMQDQSIMR  300
LLTEPQAPSL RRSSSNYLGG QDVPSYSAAP IEFDSIWNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-125NAC family protein