PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0168581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 363aa MW: 39783.3 Da PI: 6.423

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0168581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl RcHm_v2.0_Chr2g0168581 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.2	2.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l RcHm_v2.0_Chr2g0168581 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKLT 120 QIGGHSKDEG FTSTCSQQAT IARGQWERRL QTDIHTARQA LREALSPAEN YKPDGFASSV 180 SLSSTSTTTS TDLKPSMDIV PAGQSDQSPS TTLSTTYASS TENISRLLKG WMKNPPKSAK 240 TGTTAAAGVI DSTSSNEEAT LSAANTTTTT STTGHGSIQL SNAFESLFGF ECSLEASNSD 300 LSPTMSPDQG SLFQAESKPD VDQDQMPLSL LEKWLFDEAA VIHGKEVHFS DFIALDGENA 360 NFF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKLT  120
QIGGHSKDEG FTSTCSQQAT IARGQWERRL QTDIHTARQA LREALSPAEN YKPDGFASSV  180
SLSSTSTTTS TDLKPSMDIV PAGQSDQSPS TTLSTTYASS TENISRLLKG WMKNPPKSAK  240
TGTTAAAGVI DSTSSNEEAT LSAANTTTTT STTGHGSIQL SNAFESLFGF ECSLEASNSD  300
LSPTMSPDQG SLFQAESKPD VDQDQMPLSL LEKWLFDEAA VIHGKEVHFS DFIALDGENA  360
NFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	2e-98	MYB family protein