PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0168651

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 364aa MW: 40919.7 Da PI: 7.417

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0168651	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.5e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg RcHm_v2.0_Chr2g0168651 15 MLPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATG 100 579*************************.89***********9888999**************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl RcHm_v2.0_Chr2g0168651 101 TDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 ***956677*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEEKNDQMDK ADDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSIPDSSP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR 180 ALSQSWLSTL PEPTASGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQGSTYSA 240 FDALPYKPNF NPALVGENLP NGGIMFSPIE MSSPPNFNHA LVGDLSNNNT SGSIDFDGSQ 300 QQQFSNGFSI SLAQDQNQQN TNTSQANNNN SHWGAIRSIG FPFSLGSDDP SDMSTSYSTN 360 KCYT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEEKNDQMDK ADDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSIPDSSP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALSQSWLSTL PEPTASGFLT QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QHQQGSTYSA  240
FDALPYKPNF NPALVGENLP NGGIMFSPIE MSSPPNFNHA LVGDLSNNNT SGSIDFDGSQ  300
QQQFSNGFSI SLAQDQNQQN TNTSQANNNN SHWGAIRSIG FPFSLGSDDP SDMSTSYSTN  360
KCYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	2e-97	NAC family protein