PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0168811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 92aa    MW: 10411.8 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0168811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-0722581854
                            HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                            +  ++Lr+l+P+ +   +s K+s + +L++++ YI++L
  RcHm_v2.0_Chr2g0168811 22 ELVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 58
                            56689*******76.99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MSSRRSRQSS GSPSIKDDQI IELVSKLRQL VPEIRDRRSD KVSASKVLQE TCSYIRNLHR  60
EVDDLSERLS QLLATIDADS AEAAIIRSLI MQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-37bHLH family protein