PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0169321
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 305aa    MW: 34252.3 Da    PI: 5.543
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0169321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.13.9e-40241231100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             aCaaCk++rr+C+kdC lap+fpa+qpk f+n+h+l+G+sn++k+lk++++e++e+am+s++ye+++ra+ Pv G++g+i++l+ ql
  RcHm_v2.0_Chr2g0169321  24 ACAACKYQRRRCTKDCDLAPHFPADQPKMFQNAHRLYGVSNIMKILKQTHPEQKEEAMRSIIYESNMRAKFPVTGCMGIINQLTFQL 110
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +q+  el +++++
  RcHm_v2.0_Chr2g0169321 111 QQAFDELRYVRSH 123
                             ******9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MIIKTVDECS YFPTMTIKGG TSQACAACKY QRRRCTKDCD LAPHFPADQP KMFQNAHRLY  60
GVSNIMKILK QTHPEQKEEA MRSIIYESNM RAKFPVTGCM GIINQLTFQL QQAFDELRYV  120
RSHLAICRDQ CQYQYNSPSC PSSQLQLGIQ TNDHEALQLY QQQYQYHQYN SAAGSSAGGG  180
GMSLMANEYL ANGINGVYID DNDSVVKPLR VQQFYYGNNN VDAVAVQHNL ITSQGFPIQQ  240
EMDVPHDYDD IPFDTIADDR QSYIDSKEAC ESSAESAFKG TTTQSLEHVS QNDLKSAAAC  300
FSLTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-43LBD family protein