PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0172921
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 157aa    MW: 17238.3 Da    PI: 8.2868
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0172921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.11.8e-4414112199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+
  RcHm_v2.0_Chr2g0172921  14 PCAACKFLRRKCMPDCVFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQV 100
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallke 99 
                              +l++el+++++
  RcHm_v2.0_Chr2g0172921 101 LRLQKELDATNA 112
                             *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MASSSSYSSS CNSPCAACKF LRRKCMPDCV FAPYFPPEEP HKFANVHKIF GASNVSKLLN  60
EVLPHQREDA VNSLAYEAEA RIKDPVYGCV GAISVLQRQV LRLQKELDAT NADLLRYAGA  120
SCNRGTGRGS HHGQNSGLYS FSSPWSSSHD PYGDHRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-64LBD family protein