PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0173191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 410aa MW: 45994.5 Da PI: 5.4151

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0173191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.7	3.6e-30	56	196	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 p G++F+P+d +l+ e+L++kv + + ++e+i+++d i++++P++Lp +k++ ++ +fF+k+ ++y+tg+rk+r+ RcHm_v2.0_Chr2g0173191 56 PTGVKFDPSDTDLI-EHLAAKVGVGNskphMFIDEFIPTIDwdigICYTHPENLP-GAKKDGSSFHFFHKTCNAYSTGRRKRRKidk 140 89**********.999999877665665334445666655566******.556778899**************8788 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++ +W++tgk+k++ s g + g kk++v+yk + +k+ ktdWvmh+y+l RcHm_v2.0_Chr2g0173191 141 ehdlaAQAVRWHKTGKTKAIRS--GVHPGWKKIMVLYKSsiKGSKADKTDWVMHQYHL 196 8888777999******99..889******6544788899*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MLAFIFMAWL INSRGFANKV KNCASQIKDC GASRECPKCH YLISNSDVST EWPGFPTGVK 60 FDPSDTDLIE HLAAKVGVGN SKPHMFIDEF IPTIDWDIGI CYTHPENLPG AKKDGSSFHF 120 FHKTCNAYST GRRKRRKIDK EHDLAAQAVR WHKTGKTKAI RSGVHPGWKK IMVLYKSSIK 180 GSKADKTDWV MHQYHLGSTE DEKEGEYVVS KIFYQQPKQA DKSDHNLVIE ESESYVLQRS 240 PITPITNPPT TPAPEESAWC DAGPDEYMQN SYAKVAEHVP EVSQYAQLRK FEDSMSHVPQ 300 LDSQFENNVG QPTWLAGESQ VDEYCGLNCF DDTLLCKETF NSSTPLNGPV LNPISNGDCV 360 NNTYGVTGNS STAFGIPDLE NLEFDSPPDF QLTGLQFCSQ DSILEWLDRL

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MLAFIFMAWL INSRGFANKV KNCASQIKDC GASRECPKCH YLISNSDVST EWPGFPTGVK  60
FDPSDTDLIE HLAAKVGVGN SKPHMFIDEF IPTIDWDIGI CYTHPENLPG AKKDGSSFHF  120
FHKTCNAYST GRRKRRKIDK EHDLAAQAVR WHKTGKTKAI RSGVHPGWKK IMVLYKSSIK  180
GSKADKTDWV MHQYHLGSTE DEKEGEYVVS KIFYQQPKQA DKSDHNLVIE ESESYVLQRS  240
PITPITNPPT TPAPEESAWC DAGPDEYMQN SYAKVAEHVP EVSQYAQLRK FEDSMSHVPQ  300
LDSQFENNVG QPTWLAGESQ VDEYCGLNCF DDTLLCKETF NSSTPLNGPV LNPISNGDCV  360
NNTYGVTGNS STAFGIPDLE NLEFDSPPDF QLTGLQFCSQ DSILEWLDRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	158	RRKRRKIDKEHDLAAQAVRWHKTGKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	7e-88	NAC family protein