PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0174081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 282aa    MW: 31935.7 Da    PI: 4.6412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0174081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-131461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr2g0174081 14 RGPWTIEEDHKLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61
                            89******************************99************97 PP
2Myb_DNA-binding52.98.8e-1767110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr2g0174081  67 RGAFTETEEDQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                             89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TETEEDQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDSVSNKAID PKESMEDNKE IVTDISTELG QDNGLEPKLL QDDDNGNKGF EELSNEVELS  180
AFDETADVLE NYEMFCGSLD LGTFMLNQGV SNSSTISSNN TSATTTTTNS SISVEESNYN  240
PSISIGDRSL LQQNCLQQWV ESVDSMLSWD GFNNLEQDLF FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-81MYB family protein