PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0175851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11846.9 Da    PI: 10.6618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0175851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krie+k++rqvtfskRr+g++KKA ELSvLC++ev +iifs +g+lye++s
  RcHm_v2.0_Chr2g0175851  9 KRIEDKIRRQVTFSKRRTGLMKKARELSVLCGVEVGLIIFSAKGRLYEFCS 59
                            79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MGRGKVQLKR IEDKIRRQVT FSKRRTGLMK KARELSVLCG VEVGLIIFSA KGRLYEFCSG  60
DRYAVRSLFL NFSASEYCYV SLFTFNRLVN TFLYSMQQIS SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-28MIKC_MADS family protein