PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0175911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 201aa MW: 22400.7 Da PI: 9.1869

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0175911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.8	9.3e-33	120	178	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk ++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+ RcHm_v2.0_Chr2g0175911 120 LDDGYRWRKYGQKAVKANKFPRSYYRCTYEGCNVKKQVQRLSKDEGIVVTTYEGMHTHP 178 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MDTYQMFFPG SSAASPSSMA ALSSPNMGNP QVLLYSSSGT TNFGGESSSS THGFLGSTGT 60 ENQVTNGRQL VVKDDDDRYS DDRAANHDHS PPAADNSGKV KKKTRKPKYA FQTRSQVDIL 120 DDGYRWRKYG QKAVKANKFP RSYYRCTYEG CNVKKQVQRL SKDEGIVVTT YEGMHTHPID 180 KPNSDNFEHI LTQMQLTNYT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-52	WRKY family protein