PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0176181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 238aa    MW: 27100.4 Da    PI: 9.6899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0176181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.3e-25101741128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra....... 77 
                             lp+G+rF+Ptdeelvv+yL++kv+g +l++ ++i++   + y  +P++Lp+   ++ ++ yfF +++ + + ++k++nr+       
  RcHm_v2.0_Chr2g0176181  10 LPVGYRFDPTDEELVVHYLRRKVHGLPLPA-SIIPDYnnNYYFDHPSHLPMPPGETMQKRYFFYNSEYNDEkSKKNNNRSnykraaa 95 
                             799***************************.7899885334555*****96444444566666665544441344445544556665 PP

                     NAM  78 .tksgyWkatgkdkevlsk....kgel..........vglkktLvfy...............kgrapkgektdWvmheyrl 128
                              +  g W++ gk+k+++++    +  +           g++ktLvf                ++  + +++ +W+mhey+l
  RcHm_v2.0_Chr2g0176181  96 aAGCGSWRSIGKEKQIVATthsdH--QsscsqaqlavLGVRKTLVFCgshrkketnhhyhyqHQYGSLSSSPRWFMHEYNL 174
                             566899***********9866541..15566677787*********97666555444443321222233477899999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MNGGGGVQML PVGYRFDPTD EELVVHYLRR KVHGLPLPAS IIPDYNNNYY FDHPSHLPMP  60
PGETMQKRYF FYNSEYNDEK SKKNNNRSNY KRAAAAAGCG SWRSIGKEKQ IVATTHSDHQ  120
SSCSQAQLAV LGVRKTLVFC GSHRKKETNH HYHYQHQYGS LSSSPRWFMH EYNLLGSEVL  180
GNSWILCSVF QKRRKPASKK RGRTSTLDIT GSGYLPKPSN SCSSEITTHD QEVFSKCY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.26e-24NAC family protein