PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0447511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 160aa    MW: 18701.7 Da    PI: 10.3304
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0447511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.14.1e-251801090
                    FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                            +GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw+vtk+ +eHnH+l 
  RcHm_v2.0_Chr3g0447511  1 MGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTVNPRAPTRVGCMAMLSIKKLNIGKWVVTKFIKEHNHALI 80
                            7**********************************999.9**************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MGFNTRMNYL SRSKHDGTII ARTFVCSKEG YRKPDRRDKK TVNPRAPTRV GCMAMLSIKK  60
LNIGKWVVTK FIKEHNHALI ASKRPKGLIE DQIPDDKTKI EELTQELFLE RERSASLRKV  120
IDLLFEHIEE HTQDLSKKVQ YVVDKVKEIE SEGTDRHKLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-54FAR1 family protein