PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0447961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 441aa MW: 48182.3 Da PI: 8.3254

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0447961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4e-11	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p RcHm_v2.0_Chr3g0447961 52 EPDCSYYIRTGLCRFGATCRFNHPP 76 789********************97 PP
2	zf-CCCH	38.8	1.5e-12	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ RcHm_v2.0_Chr3g0447961 97 QPECQYYLKTGTCKFGATCKFHHPR 121 799********************96 PP
3	zf-CCCH	31.3	3.6e-10	145	167	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+ ++CkF+H++ RcHm_v2.0_Chr3g0447961 145 ECAYYLRTGQCKFASTCKFHHPQ 167 7********************97 PP
4	zf-CCCH	37.9	3e-12	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ RcHm_v2.0_Chr3g0447961 302 PGQPECQFYMKTGDCKFGAVCRFHHPR 328 5789*********************96 PP
5	zf-CCCH	40.1	5.9e-13	348	374	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ RcHm_v2.0_Chr3g0447961 348 PGEPLCIFYSRYGICKFGPSCKFDHPM 374 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MDFDAGIPMS RASAAPVTDD ASSLSPQDAM WQMNLRSSES MEPGPYPERA GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARMKGE FPERIGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV ALNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN MMVSLSGSPV 180 YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS VPGWSPYSGQ 240 VGSISTSEGQ QQTIGSSQVY GTPRQREPEN SGSQGAFSSY RSGSIPVGFY ALQRENVFPE 300 RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE PLCIFYSRYG 360 ICKFGPSCKF DHPMGIFTYN LSASSSAESP ARRLLGSTSG TTSLNLSSEG LVEAGSTKPR 420 RLSLSEPRQM PSADENIDTE E

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MDFDAGIPMS RASAAPVTDD ASSLSPQDAM WQMNLRSSES MEPGPYPERA GEPDCSYYIR  60
TGLCRFGATC RFNHPPNRKL AIATARMKGE FPERIGQPEC QYYLKTGTCK FGATCKFHHP  120
RDKAGIAGRV ALNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN MMVSLSGSPV  180
YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS VPGWSPYSGQ  240
VGSISTSEGQ QQTIGSSQVY GTPRQREPEN SGSQGAFSSY RSGSIPVGFY ALQRENVFPE  300
RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE PLCIFYSRYG  360
ICKFGPSCKF DHPMGIFTYN LSASSSAESP ARRLLGSTSG TTSLNLSSEG LVEAGSTKPR  420
RLSLSEPRQM PSADENIDTE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein