PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0449031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 166aa    MW: 18569.9 Da    PI: 9.9739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0449031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-173584255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr++  +g+WvAeIr+p+    r +r +lg+f t  eAa a++ a++kl+g
  RcHm_v2.0_Chr3g0449031 35 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 84
                            69****999.**********83....46************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MDNDQERKVT RKANMGRSRK GSMKGKGGPE NATCTFRGVR QRTWGKWVAE IREPKRGARL  60
WLGTFNTSTE AALAYDDAAR KLYGSSAKLN LPDHSSSSSS SSSTSPSSKT SSADKGCGEH  120
KHHYYKKGLR GLIICVPFDT YRDKYVSPLS YRDIYHMCAY CLCSYC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-35ERF family protein