PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0449471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 433aa MW: 48359.7 Da PI: 5.0371

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0449471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.2e-33	235	289	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fveav+qLGGse+AtPk il++mkv++Lt++hvkSHLQkYR+ RcHm_v2.0_Chr3g0449471 235 KARMRWTQELHEAFVEAVNQLGGSERATPKGILNVMKVESLTIYHVKSHLQKYRT 289 68****************************************************8 PP
2	Myb_DNA-binding	53.1	7.2e-17	237	288	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av+qlGg t+k I + m + +t +++ks++qky+ RcHm_v2.0_Chr3g0449471 237 RMRWTQELHEAFVEAVNQLGGSeraTPKGILNVMKvESLTIYHVKSHLQKYR 288 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MSNLGTSKAM SAAFPHLPAP LDVNYSRLPD SFQVSAQREK PMHSMLPQSS SLGNSFPSSS 60 RLPCDSLISS VYPHERHSQI SPINRLPSGE SLSLTHSQLQ STPVASYPEQ NKDISWCPDS 120 IQEFLHFPEN LPDQNGLVDT STGVIMSDDH AEKTDWSDLY PLISFDGPLD PYWELSIDDV 180 PAVDPKPEVL KHSSNIPVQQ PEIQQHQPEI QQHQPVQSGE IFTSPDPVST APSTKARMRW 240 TQELHEAFVE AVNQLGGSER ATPKGILNVM KVESLTIYHV KSHLQKYRTA RYKPESSEGT 300 CEKIPTPVEE MNSIDLKTSG MGITEALRLQ VELQKQLHEQ LESQRKLQLE IEEQSKYLEK 360 MFEQQRKMED NRVKPTSSTS DEHNKIGTST PVDEGSQDAS MKQKAQESET HENHDPPGDA 420 DSGAVPTKRA RTG

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MSNLGTSKAM SAAFPHLPAP LDVNYSRLPD SFQVSAQREK PMHSMLPQSS SLGNSFPSSS  60
RLPCDSLISS VYPHERHSQI SPINRLPSGE SLSLTHSQLQ STPVASYPEQ NKDISWCPDS  120
IQEFLHFPEN LPDQNGLVDT STGVIMSDDH AEKTDWSDLY PLISFDGPLD PYWELSIDDV  180
PAVDPKPEVL KHSSNIPVQQ PEIQQHQPEI QQHQPVQSGE IFTSPDPVST APSTKARMRW  240
TQELHEAFVE AVNQLGGSER ATPKGILNVM KVESLTIYHV KSHLQKYRTA RYKPESSEGT  300
CEKIPTPVEE MNSIDLKTSG MGITEALRLQ VELQKQLHEQ LESQRKLQLE IEEQSKYLEK  360
MFEQQRKMED NRVKPTSSTS DEHNKIGTST PVDEGSQDAS MKQKAQESET HENHDPPGDA  420
DSGAVPTKRA RTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	2e-68	G2-like family protein