PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0450011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 234aa    MW: 26176.9 Da    PI: 4.2656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0450011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1999148355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae+Aa a+++a+ +++g
  RcHm_v2.0_Chr3g0450011  99 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEDAALAYDQAAFAMRG 148
                             9*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MDSSEFSFES CSSFSSLGSD LSWDLFNFDH SYNQVQVPAQ LPFNENDSEE MVLYGVLAQV  60
GAGDSSDATS TAHLSKDHEE VNSNAAVEYE EPMKDEIAYR GVRRRPWGKY AAEIRDSTRN  120
GVRVWLGTFD TAEDAALAYD QAAFAMRGTL AVLNFPADVV YQSLVDMNYG FEEGSSPVLA  180
LKKRHSMKRK SSMNKKKKDV QKCDDDVEEL RLENVVVFED LGADYLEELL SISS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182198KKRHSMKRKSSMNKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-48ERF family protein