PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0450921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 138aa MW: 15816.8 Da PI: 10.5964

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0450921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	42	102	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql++L elF ++p+a+++ + +++l +++ ++V++WFqN+Ra+e++ RcHm_v2.0_Chr3g0450921 42 SSRWNPTPEQLRVLDELFGHgLKTPTAQQILQVTARLrhfgKIEGKNVFYWFQNHRARERQ 102 58**************988************************************97 PP
2	Wus_type_Homeobox	109.7	1.6e-35	41	104	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+PtpeQ+++L+el+ +Gl+tP++++i ++ta+L+++Gkie+kNVfyWFQN++aRerqk+ RcHm_v2.0_Chr3g0450921 41 PSSRWNPTPEQLRVLDELFGHGLKTPTAQQILQVTARLRHFGKIEGKNVFYWFQNHRARERQKR 104 689***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence
MGYSKTINIF HTEVGVKSLQ GRSGGDDCYN GHQPSSAASQ PSSRWNPTPE QLRVLDELFG 60 HGLKTPTAQQ ILQVTARLRH FGKIEGKNVF YWFQNHRARE RQKRRRELMS MRQYHSKEQQ 120 LWSNKESAGG IGLGTVLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	5e-24	WOX family protein