PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0451111

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 332aa MW: 35287.5 Da PI: 6.1781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0451111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	180	224	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L RcHm_v2.0_Chr3g0451111 180 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 224 99*********************8.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MAGNPPEGLG DDFFEQIMAV PQTYSGSGSA AESAGGGYGD VGSMPMVLQL GSGTGSSSGS 60 GVGYRGGVGS VGMGMGMPLG LNLEQGFLGQ DRFRDEVEPN SNTNNNNGNS SNERDSVHMT 120 SLFPAFGHLQ NHSVRPTPPP PQPHQQFHSQ PAPGPAAAAH HPPAIRPRVR ARRGQATDPH 180 SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG 240 AVAQLVADVP LSAVEGEGIE GGTNNQQAWE KWSNDGTEQQ VAKLMEEDVG AAMQYLQSKA 300 LCIMPISLAP AIFRTHQPDA TTMVKPESHN SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	4e-58	bHLH family protein