PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0452161
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18947.7 Da    PI: 5.42
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0452161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74e-15957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            k+i+nk   + tf kRr+g++ KA EL++ ++a++avi fs+ +k +++
  RcHm_v2.0_Chr3g0452161  9 KKISNKNALKATFLKRRQGLFHKADELCTKTGAQIAVIAFSPGDKPFTF 57
                            689***************************************9998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MGIKKNEMKK ISNKNALKAT FLKRRQGLFH KADELCTKTG AQIAVIAFSP GDKPFTFGHP  60
SADSVIDQYY YPGKQVLEEN SSLGSVVIDE QDEKVKFWLD KPIEGMGLDE LKEFERWVED  120
ELDETKMRRS CTKDLLGLNW IEDPKLDEMK IRESRTKDFL ANWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23M-type_MADS family protein