PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0452171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20810.8 Da    PI: 5.9256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0452171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.5e-13955147
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            k+i +k   +vt+skRr+g++ KA E +  ++a++a+i fs+  k  
  RcHm_v2.0_Chr3g0452171  9 KKITDKNSLKVTYSKRRKGLFRKADEFCSKTGAQIAIITFSPGMKPM 55
                            678999999********************************976655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MGLKKIEIKK ITDKNSLKVT YSKRRKGLFR KADEFCSKTG AQIAIITFSP GMKPMTFGNP  60
SVESVINRYE LCEQSSNDKE ILDEDRDLHE VAMSDEEKEI IEGMELNELK QHVSSVEEQR  120
NKLAWQIKDR KRRESSTIDL FGMNASVDLN LFGMKVGEMM EIEETKRRES CTKDFLSNFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134DRKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-22M-type_MADS family protein