PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0452871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 325aa    MW: 37436.5 Da    PI: 6.2925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0452871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM867e-2761391128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyat.gkrknratksg 81 
                             lp+Gf+FhPtd+el+ +yL+ kv+g++++ e+ ik++d+y k+ePwd+ +++ +    +++++yfF+k +k   + +    r+   g
  RcHm_v2.0_Chr3g0452871   6 LPVGFKFHPTDQELLGYYLRSKVSGEPFRYETQIKSFDLYgKTEPWDIWTEFGGpeldQSEDLYFFTKLKKMGDSaSMYYARKSGYG 92 
                             79****************************999*****99578*****753333333245688****99888765266778888999 PP

                     NAM  82 yWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                             +Wk + k  +v+++k+++   g++k + +   ++++ +++ W+mhey++
  RcHm_v2.0_Chr3g0452871  93 TWKGKSKGVTVYDSKNKKivLGTRKLFHYE--NNESDQNCCWIMHEYSI 139
                             9**999999999984444326666665554..555558*********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MTAKDLPVGF KFHPTDQELL GYYLRSKVSG EPFRYETQIK SFDLYGKTEP WDIWTEFGGP  60
ELDQSEDLYF FTKLKKMGDS ASMYYARKSG YGTWKGKSKG VTVYDSKNKK IVLGTRKLFH  120
YENNESDQNC CWIMHEYSIP PSKTSDLPHE YVLCRIRINV DRRRKLVAKK VSQNHVNNEA  180
IDHEYELEDQ TTMTRETYAE LNDINPPLED NDAFNTSTDH VSNASKSLHT SQPLPSYPKL  240
EVMACETNVE LTDHDNVHDY PLYEDYVFNS INVGDTHRLQ QQSFRTQTET LKGGSYPPYS  300
YPSFQRSSNK VGESSTSAVA KAGRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-21NAC family protein