PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0454211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 339aa MW: 38454.9 Da PI: 5.6926

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0454211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.6e-13	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P + + ++ + a+i A++++k+L+ RcHm_v2.0_Chr3g0454211 126 QRMTHIAVERNRRKQMNEYLSALRSIMPDS---YVQRGDQASIIGGAINFVKELE 177 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MALDAVVFPQ DPFTYTTNKD LYNLLAGNWS CDDHDDHQQQ HLLQEASFDF LGNQTDHHFT 60 TYCSPPSIVP HFDDLQLSNP NPDGSTDFDQ AQLQLPLVED TGPTTTIRPK RRRAKSKKNK 120 EEIENQRMTH IAVERNRRKQ MNEYLSALRS IMPDSYVQRG DQASIIGGAI NFVKELEQQV 180 QFLGAQKPNN NNSDLPFSDF FSFPQYSSST TSTSTSTGHQ TSHENRYDSD QRPSVEHKYA 240 ADMNVRVAAD IEVTMVESHA NLKVRSKRVP KQLLKFVSGL HTLRLTILHL NVATVDEIVL 300 YSLSVKVEED CALTSVDEIA TAVYQMLARI QEEAMLHLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	138	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	4e-68	bHLH family protein