PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0454651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 286aa    MW: 33340.9 Da    PI: 5.1883
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0454651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.4e-2551352128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diy.kvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratks 80 
                             p+G+rFhPtd+elv++yL++k++  + ++    ++++ d y k+ePw+   k    ++ ++ + ++fF+kr+k +++g+r  r++ +
  RcHm_v2.0_Chr3g0454651   5 PVGVRFHPTDNELVSYYLRNKATMGDgFQS-PYVSDCpDFYgKWEPWTVWdKyggnSHVEDGEPLFFFTKRKKLSPNGTRFDRKMGT 90 
                             89*******************988884555.6699998988578*****7334443222244577********************** PP

                     NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             g+W+++   k v   +g+++glk+ + +  g +++ ++  W+mhey+l
  RcHm_v2.0_Chr3g0454651  91 GTWSNQYFVKVVE--EGKVIGLKRDFRYE-GGSSSDQNNAWLMHEYEL 135
                             ****998866665..599*********98.55555699********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEGFPVGVRF HPTDNELVSY YLRNKATMGD GFQSPYVSDC PDFYGKWEPW TVWDKYGGNS  60
HVEDGEPLFF FTKRKKLSPN GTRFDRKMGT GTWSNQYFVK VVEEGKVIGL KRDFRYEGGS  120
SSDQNNAWLM HEYELNKKDV TVLCTLRKKP TKRPPRGSET KKESVDENQR KRKLDEVVDD  180
LEQDLDERRK LIRDLDQRRK LRANRPRKEE TSCEEQGGSI TIDHHQGSSS RTPCDEAYRP  240
ELVPDLATAD DIVFTSYDFF ASTPDDPLHV ECNEFLDQFY EDNNFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-17NAC family protein