PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0455241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 154aa    MW: 17564.6 Da    PI: 5.3485
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0455241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.42.4e-496101297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             +eqdr+lPianv+rimk++lP++ak+sk+ak+ +qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e+ + yl+
  RcHm_v2.0_Chr3g0455241   6 EEQDRLLPIANVGRIMKQILPQRAKVSKEAKQRMQECATEFLSFVTGEASDKCHKENRKTVNGDDICWALSALGFDNYAEATTRYLH 92 
                             69************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             k+re+e+e+
  RcHm_v2.0_Chr3g0455241  93 KFREAERER 101
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MVDHEEEQDR LLPIANVGRI MKQILPQRAK VSKEAKQRMQ ECATEFLSFV TGEASDKCHK  60
ENRKTVNGDD ICWALSALGF DNYAEATTRY LHKFREAERE RLAANQSNVN INTSSSSPLE  120
IREEDQPIYL SGTQTPNLEF RILEKGDNSF AKQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-57NF-YB family protein