PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0455311

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 519aa MW: 57026.3 Da PI: 8.6779

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0455311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RcHm_v2.0_Chr3g0455311 91 FVCEICKKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	12.1	0.00061	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ RcHm_v2.0_Chr3g0455311 167 WKCDKCSKKYAVQSDWKAHSKTC 189 58*****************9998 PP
3	zf-C2H2	11.3	0.0011	197	215	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + RcHm_v2.0_Chr3g0455311 197 DCGTVFSRRDSFITHRAFC 215 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MSTITGSGVR SFSSGNTTSA EEVLQQQQQQ ELLNHFHGSN SLEEITINGN SATEQQQPPP 60 AKKKRNLPGT PDPSAEVIAL SPKTLMATNR FVCEICKKGF QRDQNLQLHR RGHNLPWKLK 120 QRSSTEIRKR VYICPEPSCV HHEPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS 180 DWKAHSKTCG TREYKCDCGT VFSRRDSFIT HRAFCDAIAE ENKTPVQGQG VLMSNNMGQQ 240 NLQQGGQLVS GGELMIPASI PMSNTETAAT IPSTRSSNTS DHFDHFDTKN PNLTLLPQGV 300 PANMLPSSRC GLNNNSLSSP TSSALFHNHH GHQVLPSSIS GHLSATELLQ KAAQMGATMS 360 SNNSSGMSMA PSTYGDFPSY VNNQFMQHKD GNSIPVQETS SQFFGASNGN MGMFSGLLFD 420 QSNGVLMKNM EQSVNGRSNN NNNNNTSNGF SLHGKNVSRG GDTMTVDFLG IGRGRGGGGG 480 NRSETFHDHQ QRQVLHDEHQ RQNKQEDDDQ LMGFGWSWS

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MSTITGSGVR SFSSGNTTSA EEVLQQQQQQ ELLNHFHGSN SLEEITINGN SATEQQQPPP  60
AKKKRNLPGT PDPSAEVIAL SPKTLMATNR FVCEICKKGF QRDQNLQLHR RGHNLPWKLK  120
QRSSTEIRKR VYICPEPSCV HHEPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS  180
DWKAHSKTCG TREYKCDCGT VFSRRDSFIT HRAFCDAIAE ENKTPVQGQG VLMSNNMGQQ  240
NLQQGGQLVS GGELMIPASI PMSNTETAAT IPSTRSSNTS DHFDHFDTKN PNLTLLPQGV  300
PANMLPSSRC GLNNNSLSSP TSSALFHNHH GHQVLPSSIS GHLSATELLQ KAAQMGATMS  360
SNNSSGMSMA PSTYGDFPSY VNNQFMQHKD GNSIPVQETS SQFFGASNGN MGMFSGLLFD  420
QSNGVLMKNM EQSVNGRSNN NNNNNTSNGF SLHGKNVSRG GDTMTVDFLG IGRGRGGGGG  480
NRSETFHDHQ QRQVLHDEHQ RQNKQEDDDQ LMGFGWSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein