PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0455471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 103aa    MW: 11456.8 Da    PI: 6.7811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0455471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-071558344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   + +  a +++ ++   +W  +ar +g ++t++++k ++
  RcHm_v2.0_Chr3g0455471 15 SWTAKQNKAFEIALALYDKDtadRWYNVARAVG-NKTPEEVKRHY 58
                            7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    
MASSSMSTSC NSGSSWTAKQ NKAFEIALAL YDKDTADRWY NVARAVGNKT PEEVKRHYDL  60
LVEDVKLIES GQIPFPDYMT CGGSGSGNIG HDEEKRMRNL KLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-39MYB_related family protein