PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0455971

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 81aa MW: 9865.38 Da PI: 10.2616

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0455971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.2e-18	7	67	2	56
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+ +t++q+++L+el+ + p+ e+ ++++ +l +++ ++V++WFqN+Ra+ek RcHm_v2.0_Chr3g0455971 7 NTRWLPTRDQIRILKELYDDkgVKCPTVEQVQRITLQLkwygEIENKNVFYWFQNQRAREK 67 58***************6569***********************************9 PP
2	Wus_type_Homeobox	97.7	9.5e-32	6	69	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW Pt +Qi+iL+ely+ +G++ P+ e++qrit +L+ yG+ie+kNVfyWFQN++aRe+ k RcHm_v2.0_Chr3g0455971 6 SNTRWLPTRDQIRILKELYDdKGVKCPTVEQVQRITLQLKWYGEIENKNVFYWFQNQRAREKLK 69 789**************999*************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence
MHCKQSNTRW LPTRDQIRIL KELYDDKGVK CPTVEQVQRI TLQLKWYGEI ENKNVFYWFQ 60 NQRAREKLKN NKLTSDVQVP K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-26	WOX family protein