PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0456711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 183aa    MW: 19998.9 Da    PI: 11.9231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0456711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.6e-181951133
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                            C+ C++t TplWR+gp g+ktLCnaCG++ rk+
  RcHm_v2.0_Chr3g0456711 19 CVDCKVTRTPLWRSGPAGPKTLCNACGIRLRKR 51
                            *******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MINLRSKGSV AEESAERSCV DCKVTRTPLW RSGPAGPKTL CNACGIRLRK RLASLNPEDK  60
ANKGKRKKSR TERTRPTASV STNGSTTNTA AGKSTSTTAK SASPPPPPPP AAYGNARGSR  120
GTYLLRAVRI VANKQRVVRK LRWCFQRRRR TNFRRTGFYF FDKNVEQAAV AALLALSCGS  180
SLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14968RKRLASLNPEDKANKGKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.11e-14GATA family protein