PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0457291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 196aa    MW: 21914.4 Da    PI: 11.7942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0457291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.00017125169554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                rErrR   + ++   L +l+P +     +K      Le++++YI  L
  RcHm_v2.0_Chr3g0457291 125 DVRRERRRTPAVQKKVKVLSQLVPGC-----RKAPLPNLLEETTDYIAAL 169
                             5679*********************9.....67777789********988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAASFVSNPD PCLDSSRKKR RKVEDDRNPA STTQARWRSD KEQRIYSTKL VEALRKVRQG  60
SSSSPVAVSG GKIVKEAADR VLAVAAKGTT RWSRAILRSR LRLSKRLQKC RKARVTGDSR  120
CKRADVRRER RRTPAVQKKV KVLSQLVPGC RKAPLPNLLE ETTDYIAALE MQVRAMTVLT  180
ELLSGAPAAN RLNFTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.27e-20bHLH family protein