PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0457681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 225aa    MW: 26130.7 Da    PI: 9.263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0457681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61.1e-48151422128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                             +pGfrFhPt+eelv +yLk+k+ +k+++l ++i+e+d+yk+eP++Lp  + +++++ +w+fF +r+ ky++  +r nrat++gyWk 
  RcHm_v2.0_Chr3g0457681  15 QPGFRFHPTEEELVLYYLKRKICHKRFQL-NIITETDVYKCEPEELPglSLLQTGDLQWFFFNPRNCKYPNkPTRINRATRHGYWKV 100
                             69***************************.89***************6447777888*************8468************* PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd+++++ +++ vg+kktLvfy+grap+g++tdWvmhey+l
  RcHm_v2.0_Chr3g0457681 101 TGKDRTITN-NSRSVGVKKTLVFYTGRAPSGNRTDWVMHEYTL 142
                             *********.999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MMVSADDLVI VFRQQPGFRF HPTEEELVLY YLKRKICHKR FQLNIITETD VYKCEPEELP  60
GLSLLQTGDL QWFFFNPRNC KYPNKPTRIN RATRHGYWKV TGKDRTITNN SRSVGVKKTL  120
VFYTGRAPSG NRTDWVMHEY TLHDEELKRC GNVPDAYALC KVYKKSGLGP KNGEQYGAPF  180
KEEDCSDMDE VQETPVKQIE NQISRAKGGV NPVTKSYSYR TWRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.18e-86NAC family protein