PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0458031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 150aa    MW: 16797.7 Da    PI: 7.7857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0458031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-095779527
                            --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                             C++f +tG+C+yGd Ck+ H++
  RcHm_v2.0_Chr3g0458031 57 VCNRFIKTGFCQYGDACKYFHPK 79
                            7********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MPLGKYDCEY CDKQFQDTPY GRRRHLQSLQ HLRAKAQWYD SFKDPNDAYA QSLGRGVCNR  60
FIKTGFCQYG DACKYFHPKN NQQNTMTQGA SGVTDNSQSS TFQGNQTAAG CSLPDVVVRD  120
NMGMSWGNLP PSLMPPPEGG YPPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-24C3H family protein